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Identification of inflammatory factor-related genes associated with the prognosis and immune cell infiltration in colorectal cancer patients

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Identification of inflammatory factor-related genes associated with the prognosis and immune cell infiltration in colorectal cancer patients

Jialing Hu
Yingcheng He
Kaili Liao
Qijun Yang
Yuhan Xu
Gaoquan Cao
Xiaozhong Wang
Genes & Diseases第10卷, 第5期pp.2109-2124纸质出版 2023-09-01在线发表 2022-08-07
135002

This study aims to identify the inflammatory factor-related genes which help to predict the prognosis of patients with colorectal cancer. GSEA (Gene Set Enrichment Analysis) was used to acquire inflammation-related genes and the corresponding expression information was collected from TCGA database to determine the DEGs (differentially-expressed genes) in CRC patients. We conducted enrichment analysis and PPI (proteineprotein interaction) of these DEGs. Besides, key genes that are both differentially-expressed and prognosis-related were screened out, which were used to establish the prognostic model. We obtained 79 DEGs and 19 prognostic genes, 10 prognostic-related differential genes were eventually screened. These genes were used to construct the prognostic model. We also identified that the immune infiltration score of macrophages between different risk groups was significantly different and similar distinction was witnessed in immune function score of APC (antigen-presenting cell) costimulation and type I IFN (interferon) response.

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BiomarkerColorectal cancer (CRC)Immune infiltrationInflammatory factorsPredicting model