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Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer

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Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer

Yi Zuo
Shaoqiu Chen
Lingling Yan
Ling Hu
Scott Bowler
Emory Zitello
Gang Huang
Youping Deng
Genes & Diseases第9卷, 第2期pp.393-400纸质出版 2022-03-01在线发表 2021-01-28
118400

Liver cancer presents divergent clinical behaviors. There remain opportunities for molecular markers to improve liver cancer diagnosis and prognosis, especially since tRNA-derived small RNAs (tsRNA) have rarely been studied. In this study, a random forests (RF) diagnostic model was built based upon tsRNA profiling of paired tumor and adjacent normal samples and validated by independent validation (IV). A LASSO model was used to developed a seven-tsRNA-based risk score signature for liver cancer prognosis. Model performance was evaluated by a receiver operating characteristic curve (ROC curve) and Precision-Recall curve (PR curve). The five-tsRNA-based RF diagnosis model had area under the receiver operating characteristic curve (AUROC) 88% and area under the precision-recall curve (AUPR) 87% in the discovery cohort and 87% and 86% in IV-AUROC and IV-AUPR, respectively. The seven-tsRNA-based prognostic model predicts the overall survival of liver cancer patients (Hazard Ratio 2.02, 95% CI 1.36-3.00, P< 0.001), independent of standard clinicopathological prognostic factors. Moreover, the model successfully categorizes patients into high-low risk groups. Diagnostic and prognostic modeling can be reliably utilized in the diagnosis of liver cancer and high- low risk classification of patients based upon tsRNA characterization.

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DiagnosisLiver cancerPrognosisRandom foreststRNA-derived small RNAs